First step
We picked 5 pages of Wikipedia that best represent our theme:
Deep Web, Tor (anonymity network), Silk Road, Internet privacy and Anonymous web browsing.
Then we chose some first level "see also" from those five initials seeds considered relevant:
Tor2web, The Hidden Wiki, Anonymous P2P, Crypto-anarchism, Freedom of Information, GlobaLeaks, Internet censorship, Internet privacy, Anonymity, Anonymous blogging, Anonymous web browsing, Information Policy, Internet censorship circumvention, Privacy law, Information privacy law, Data Protection Directive, Privacy laws of the United States, Surveillance, Computer and network surveillance, Mass surveillance, Mass surveillance in the United States, Data privacy, HTTP tunnel, Internet privacy, OpenVPN, Privacy software, Privacy-enhancing technologies, Onion routing , Agorism, Bitcoin protocol, Crypto-anarchism, Operation Web Tryp, The Hidden Wiki, War on Drugs and Sheep Marketplace.
Imported the list of selected URLs in Seealsology and launched the crawl with depth 3, we exported the GEFX file and opened it in Gephi with "graph type" as "directed".
After having exported a CSV file of the edges, we edit and standardization of Id of double nodes (different for capitals, brackets...).
Then we imported the edges table cleaned up in Gephi (in a new project), forcing the creation of new nodes. After the calculation dell'Average Degree all nodes with Degree equal to 1 were eliminated and the remaining were resized according to their In-Degree.
We did a spatialization by Force Atlas 2 (LinLog mode, Scaling 0.35 , Gravity 0.25) and then applied Prevent Overlap.
At last we made Gephi Calculate Modularity and assign colors to the nodes according to it.